4D live imaging and computational modeling of a functional gut-on-a-chip evaluate how peristalsis facilitates enteric pathogen invasion.

Boquet-Pujadas A et al.

A Clinical Study Provides the First Direct Evidence That Interindividual Variations in Fecal β-Lactamase Activity Affect the Gut Mycobiota Dynamics in Response to β-Lactam Antibiotics.

Delavy M et al.

A common TMPRSS2 variant has a protective effect against severe COVID-19.

David A et al.

A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies.

Bridel S et al.

A Defect in Lipoprotein Modification by Lgt Leads to Abnormal Morphology and Cell Death in Escherichia coli That Is Independent of Major Lipoprotein Lpp.

Legood S et al.

A Dual Barcoding Approach to Bacterial Strain Nomenclature: Genomic Taxonomy of Klebsiella pneumoniae Strains.

Hennart M et al.

A global effort to dissect the human genetic basis of resistance to SARS-CoV-2 infection.

Andreakos E et al.

A highly sensitive cell-based luciferase assay for high-throughput automated screening of SARS-CoV-2 nsp5/3CLpro inhibitors.

Chen KY et al.

A large-scale genomic snapshot of Klebsiella spp. isolates in Northern Italy reveals limited transmission between clinical and non-clinical settings.

Thorpe HA et al.

A lentiviral vector encoding fusion of light invariant chain and mycobacterial antigens induces protective CD4+ T cell immunity.

Lopez J et al.

A loss-of-function IFNAR1 allele in Polynesia underlies severe viral diseases in homozygotes.

Bastard P et al.

A multi-adenylate cyclase regulator at the flagellar tip controls African trypanosome transmission.

Bachmaier S et al.

A new SARS-CoV-2 variant with high lethality poorly detected by RT-PCR on nasopharyngeal samples: an observational study.

Fillâtre P et al.

A partial form of inherited human USP18 deficiency underlies infection and inflammation.

Martin-Fernandez M et al.

A protocol for ultrastructural study of Candida albicans biofilm using transmission electron microscopy.

Mourer T et al.

A qnr-plasmid allows aminoglycosides to induce SOS in Escherichia coli.

Babosan A et al.

A Systematic Review of the Distribution of Tick-Borne Pathogens in Wild Animals and Their Ticks in the Mediterranean Rim between 2000 and 2021.

Defaye B et al.

Adaptation to novel spatially-structured environments is driven by the capsule and alters virulence-associated traits.

Nucci A et al.

Aedes mosquitoes in the emerging threat of urban yellow fever transmission.

Gabiane G et al.

Alive Pathogenic and Saprophytic Leptospires Enter and Exit Human and Mouse Macrophages With No Intracellular Replication.

Santecchia I et al.

An ancient divide in outer membrane tethering systems in bacteria suggests a mechanism for the diderm-to-monoderm transition.

Witwinowski J et al.

An early origin of iron–sulfur cluster biosynthesis machineries before Earth oxygenation.

Garcia PS et al.

An ensemble model based on early predictors to forecast COVID-19 health care demand in France.

Paireau J et al.

An interplay between cellular growth and atypical fusion defines morphogenesis of a modular glial niche in Drosophila.

Rujano MA et al.

Analytical framework to evaluate and optimize the use of imperfect diagnostics to inform outbreak response: Application to the 2017 plague epidemic in Madagascar.

Ten Bosch Q et al.

Anti-CD38 therapy impairs SARS-CoV-2 vaccine response against alpha and delta variants in patients with multiple myeloma.

Henriquez S et al.

Anti-Microbiota Vaccine Reduces Avian Malaria Infection Within Mosquito Vectors.

Aželytė J et al.

Assessment of the Safety and Efficacy of an Oral Probiotic-Based Vaccine Against Aspergillus Infection in Captive-Bred Humboldt Penguins (Spheniscus humboldti).

Thorel M et al.

Auto-antibodies against type I IFNs in > 10% of critically ill COVID-19 patients: a prospective multicentre study.

Arrestier R et al.

Autoantibodies against type I IFNs in patients with critical influenza pneumonia.

Zhang Q et al.

Autoantibodies against type I IFNs in patients with Ph-negative myeloproliferative neoplasms

Borsani O et al.

Autoantibodies Neutralizing Type I Interferons in 20% of COVID-19 Deaths in a French Hospital.

Chauvineau-Grenier A et al.

Autoantibody discovery across monogenic, acquired, and COVID-19-associated autoimmunity with scalable PhIP-seq.

Vazquez SE et al.

Bacterial crystalline cellulose secretion via a supramolecular BcsHD scaffold.

Abidi W et al.

Bacterial inhibition of Fas-mediated killing promotes neuroinvasion and persistence.

Maudet C et al.

Bacteroides thetaiotaomicron uses a widespread extracellular DNase to promote bile-dependent biofilm formation.

Béchon N et al.

Bat coronaviruses related to SARS-CoV-2 and infectious for human cells.

Temmam S et al.

Bending stiffness of Candida albicans hyphae as a proxy of cell wall properties.

Couttenier E et al.

Broadly neutralizing anti-HIV-1 antibodies tether viral particles at the surface of infected cells.

Dufloo J et al.

c-di-AMP signaling is required for bile salt resistance, osmotolerance, and long-term host colonization by Clostridioides difficile.

Oberkampf M et al.

C910 chemical compound inhibits the traffiking of several bacterial AB toxins with cross-protection against influenza virus.

Wu Y et al.

Candida albicans commensalism in the oral mucosa is favoured by limited virulence and metabolic adaptation.

Lemberg C et al.

Candidalysins Are a New Family of Cytolytic Fungal Peptide Toxins.

Richardson JP et al.

Case Report: Evolution of Humoral and Cellular Immunity in Two COVID-19 Breakthrough Infections After BNT162b2 Vaccine.

Gallais F et al.

Case Report: Invasive Cryptococcosis in French Guiana: Immune and Genetic Investigation in Six Non-HIV Patients.

Goupil De Bouillé J et al.

Cellular assays identify barriers impeding iron-sulfur enzyme activity in a non-native prokaryotic host.

D’Angelo F et al.

Characterization and functional interrogation of the SARS-CoV-2 RNA interactome.

Labeau A et al.

Characterization of SARS-CoV-2 Evasion: Interferon Pathway and Therapeutic Options.

Znaidia M et al.

ChIP-SICAP: A New Tool to Explore Gene-Regulatory Networks in Candida albicans and Other Yeasts.

Van Wijlick L et al.

Chromosome-scale assemblies of Acanthamoeba castellanii genomes provide insights into Legionella pneumophila infection–related chromatin reorganization.

Matthey-Doret C et al.

Chronic Granulomatous Disease-Like Presentation of a Child with Autosomal Recessive PKCδ Deficiency.

Neehus A-L et al.

Clinical Aspects and Detection of Emerging Rickettsial Pathogens: A “One Health” Approach Study in Serbia, 2020.

Banović P et al.

Co-infection of the four major Plasmodium species: Effects on densities and gametocyte carriage.

Holzschuh A et al.

Comprehensive Genomic Discovery of Non-Coding Transcriptional Enhancers in the African Malaria Vector Anopheles coluzzii.

Holm I et al.

Consequences of In Utero Zika Virus Exposure and Adverse Pregnancy and Early Childhood Outcomes: A Prospective Cohort Study.

Grant R et al.

Considerable escape of SARS-CoV-2 Omicron to antibody neutralization.

Planas D et al.

Defective activation and regulation of type I interferon immunity is associated with increasing COVID-19 severity.

Smith N et al.

Detecting zoonotic and non‐zoonotic pathogens in livestock and their ticks in Corsican wetlands.

Defaye B et al.

Detection of Phenuiviridae, Chuviridae Members, and a Novel Quaranjavirus in Hard Ticks From Danube Delta.

Bratuleanu BE et al.

Detection of Streptococcus gallolyticus and Four Other CRC-Associated Bacteria in Patient Stools Reveals a Potential “Driver” Role for Enterotoxigenic Bacteroides fragilis.

Périchon B et al.

DHA-containing phospholipids control membrane fusion and transcellular tunnel dynamics.

Tsai M-C et al.

Distribution of Tick-Borne Pathogens in Domestic Animals and Their Ticks in the Countries of the Mediterranean Basin between 2000 and 2021: A Systematic Review.

Defaye B et al.

Diversity and Evolution of Methane-Related Pathways in Archaea.

Garcia PS et al.

Domain Adapted Multitask Learning for Segmenting Amoeboid Cells in Microscopy.

Mukherjee S et al.

Dopamine-induced pruning in monocyte-derived-neuronal-like cells (MDNCs) from patients with schizophrenia.

Bellon A et al.

DPP9 deficiency: An inflammasomopathy that can be rescued by lowering NLRP1/IL-1 signaling.

Harapas CR et al.

Duration of BA.5 neutralization in sera and nasal swabs from SARS-CoV-2 vaccinated individuals, with or without omicron breakthrough infection.

Planas D et al.

Early chains of transmission of COVID-19 in France, January to March 2020.

Paireau J et al.

Editorial: Microbiota: A Consequential Third Wheel in the Mosquito-Pathogen Relationship.

Gendrin M et al.

Effect of change in vaccine schedule on pertussis epidemiology in France: a modelling and serological study.

Paireau J et al.

Effective anti-mycobacterial treatment for BCG disease in patients with Mendelian Susceptibility to Mycobacterial Disease (MSMD): a case series.

Mahdaviani SA et al.

Enhanced mosquito vectorial capacity underlies the Cape Verde Zika epidemic.

Rose NH et al.

Epidemiological Evidence of Nosocomial and Zoonotic Transmission of Human T-Cell Leukemia Virus-1 in a Large Survey in a Rural Population of Central Africa.

Ramassamy J-L et al.

Epidemiology and control of SARS-CoV-2 epidemics in partially vaccinated populations: a modeling study applied to France.

Bosetti P et al.

Escherichia coli –Specific CXCL13-Producing TFH Are Associated with Clinical Efficacy of Neoadjuvant PD-1 Blockade against Muscle-Invasive Bladder Cancer.

Goubet A-G et al.

Establishment of a colony of Anopheles darlingi from French Guiana for vector competence studies on malaria transmission

Puchot N. et al.

Evaluation of two artificial infection methods of live ticks as tools for studying interactions between tick-borne viruses and their tick vectors.

Migné CV et al.

Evaluation of Vector Competence of Ixodes Ticks for Kemerovo Virus.

Migné CV et al.

Evolution and activation mechanism of the flavivirus class II membrane-fusion machinery.

Vaney M-C et al.

Evolution of Plasmid Mobility: Origin and Fate of Conjugative and Nonconjugative Plasmids.

Coluzzi C et al.

Exploiting natural antiviral immunity for the control of pandemics: Lessons from Covid-19.

Aricò E et al.

Exploring the Ecological Implications of Microbiota Diversity in Birds: Natural Barriers Against Avian Malaria.

Palinauskas V et al.

Factors shaping the abundance and diversity of the gut archaeome across the animal kingdom.

Thomas CM et al.

First Case of Lethal Encephalitis in Western Europe Due to European Bat Lyssavirus Type 1.

Regnault B et al.

First Description of a Yersinia pseudotuberculosis Clonal Outbreak in France, Confirmed Using a New Core Genome Multilocus Sequence Typing Method.

Savin C et al.

Fit to dwell in many places – The growing diversity of intracellular Salmonella niches.

Luk CH et al.

Flavobacterium columnare ferric iron uptake systems are required for virulence.

Conrad RA et al.

From rare disorders of immunity to common determinants of infection: Following the mechanistic thread.

Casanova J-L et al.

Functional Portrait of Irf1 (Orf19.217), a Regulator of Morphogenesis and Iron Homeostasis in Candida albicans.

Wijlick LV et al.

Fusogenicity and neutralization sensitivity of the SARS-CoV-2 Delta sublineage AY.4.2.

Saunders N et al.

Genetics and immunity of Anopheles response to the entomopathogenic fungus Metarhizium anisopliae overlap with immunity to Plasmodium.

Bukhari T et al.

Genome-wide detection of human variants that disrupt intronic branchpoints.

Zhang P et al.

Genomic erosion and horizontal gene transfer shape functional differences of the ExlA toxin in Pseudomonas spp.

Job V et al.

Global spatial dynamics and vaccine-induced fitness changes of Bordetella pertussis.

Lefrancq N et al.

High negative predictive value of RT-PCR in patients with high likelihood of SARS-CoV-2 infection.

Galmiche S et al.

High‐throughput microfluidic real‐time PCR for the simultaneous detection of selected vector‐borne pathogens in dogs in Bosnia and Herzegovina.

Colella V et al.

HPV-Related Skin Phenotypes in Patients with Inborn Errors of Immunity.

El Kettani A et al.

Human antibody recognizing a quaternary epitope in the Puumala virus glycoprotein provides broad protection against orthohantaviruses.

Mittler E et al.

Human autoantibodies underlying infectious diseases.

Puel A et al.

Human Claudin-Derived Peptides Block the Membrane Fusion Process of Zika Virus and Are Broad Flavivirus Inhibitors.

Zoladek J et al.

Human genetic and immunological determinants of critical COVID-19 pneumonia.

Zhang Q et al.

Human OTULIN haploinsufficiency impairs cell-intrinsic immunity to staphylococcal α-toxin.

Spaan AN et al.

Human peroxiredoxin 6 is essential for malaria parasites and provides a host-based drug target.

Wagner MP et al.

Human T-bet governs the generation of a distinct subset of CD11c high CD21 low B cells.

Yang R et al.

Identification of DAXX as a restriction factor of SARS-CoV-2 through a CRISPR/Cas9 screen.

Mac Kain A et al.

Immunization with CSP and a RIG-I Agonist is Effective in Inducing a Functional and Protective Humoral Response Against Plasmodium.

Teixeira AR et al.

Impact of BNT162b2 Vaccination and Isolation on SARS-CoV-2 Transmission in Israeli Households: An Observational Study.

Layan M et al.

Impact of booster vaccination on the control of COVID-19 Delta wave in the context of waning immunity: application to France in the winter 2021/22.

Bosetti P et al.

Impact of temperature on dengue and chikungunya transmission by the mosquito Aedes albopictus.

Mercier A et al.

Impaired IL-23–dependent induction of IFN-γ underlies mycobacterial disease in patients with inherited TYK2 deficiency.

Ogishi M et al.

Inborn Errors of Immunity in Algerian Children and Adults: A Single-Center Experience Over a Period of 13 Years (2008–2021).

Belaid B et al.

Indirect Protection from Vaccinating Children against Influenza A Virus Infection in Households.

Tsang TK et al.

Infravec2 guidelines for the design and operation of containment level 2 and 3 insectaries in Europe.

Pondeville E et al.

Inherited IFNAR1 Deficiency in a Child with Both Critical COVID-19 Pneumonia and Multisystem Inflammatory Syndrome.

Abolhassani H et al.

Innate immune pathways act synergistically to constrain RNA virus evolution in Drosophila melanogaster.

Mongelli V et al.

IntegronFinder 2.0: Identification and Analysis of Integrons across Bacteria, with a Focus on Antibiotic Resistance in Klebsiella.

Néron B et al.

Intracellular niche switching as host subversion strategy of bacterial pathogens.

Gutierrez MG et al.

Intranasal Exposure to Rift Valley Fever Virus Live-Attenuated Strains Leads to High Mortality Rate in Immunocompetent Mice.

Lacote S et al.

Involvement of Microbiota in Insect Physiology: Focus on B Vitamins.

Serrato-Salas J et al.

IRF8 regulates efficacy of therapeutic anti‐CD20 monoclonal antibodies.

Grzelak L et al.

Is Plant Microbiota a Driver of Resistance to the Vector-Borne Pathogen Xylella fastidiosa?

Cabezas-Cruz A et al.

Isolated congenital asplenia: An overlooked cause of thrombocytosis

Borsani O et al.

Kinetics of the SARS-CoV-2 Antibody Avidity Response Following Infection and Vaccination.

Garcia L et al.

Larval habitat determines the bacterial and fungal microbiota of the mosquito vector

Zouache K et al.

Listeriosis, a model infection to study host-pathogen interactions in vivo.

Kammoun H et al.

Lock and Key: Why Rickettsia Endosymbionts Do Not Harm Vertebrate Hosts?

Cabezas-Cruz A et al.

Longitudinal analysis of serum neutralization of SARS-CoV-2 Omicron BA.2, BA.4, and BA.5 in patients receiving monoclonal antibodies.

Bruel T et al.

Low Lymphocytes and IFN-Neutralizing Autoantibodies as Biomarkers of COVID-19 Mortality.

Troya J et al.

Lower disease activity but higher risk of severe COVID-19 and herpes zoster in patients with systemic lupus erythematosus with pre-existing autoantibodies neutralising IFN-α.

Mathian A et al.

MAEBL Contributes to Plasmodium Sporozoite Adhesiveness.

Sá M et al.

Maternal vaccination against group B Streptococcus glyceraldehyde-3-phosphate dehydrogenase leads to gut dysbiosis in the offspring.

Bonifácio Andrade E et al.

Microbe Profile: Legionella pneumophila - a copycat eukaryote: This article is part of the Microbe Profiles collection.

Hilbi H et al.

Microbial defenses against mobile genetic elements and viruses: Who defends whom from what?

Rocha EPC et al.

Microfluidic dose–response platform to track the dynamics of drug response in single mycobacterial cells.

Mistretta M et al.

MicroRNAs and other small RNAs in Aedes aegypti saliva and salivary glands following chikungunya virus infection.

Fiorillo C et al.

Modelling the end of a Zero-COVID strategy using nirmatrelvir/ritonavir, vaccination and NPIs in Wallis and Futuna.

Brault A et al.

Modelling the impact of antimicrobial use and external introductions on commensal E. coli colistin resistance in small‐scale chicken farms of the Mekong delta of Vietnam.

Bastard J et al.

Modification of phosphoinositides by the Shigella effector IpgD during host cell infection.

Tran Van Nhieu G et al.

Molecular characterization and genetic authentication assay for Anopheles ‘hemocyte-like’ cell lines 4a-3A and 4a-3B.

Eggleston H et al.

Mosquito‐bacteria interactions during larval development trigger metabolic changes with carry‐over effects on adult fitness.

Giraud É et al.

Multiple Stochastic Parameters Influence Genome Dynamics in a Heterozygous Diploid Eukaryotic Model.

Marton T et al.

Mutational analysis of Aedes aegypti Dicer 2 provides insights into the biogenesis of antiviral exogenous small interfering RNAs.

Gestuveo RJ et al.

NAD kinase promotes Staphylococcus aureus pathogenesis by supporting production of virulence factors and protective enzymes.

Leseigneur C et al.

Neutralising antibody responses to SARS-CoV-2 omicron among elderly nursing home residents following a booster dose of BNT162b2 vaccine: A community-based, prospective, longitudinal cohort study.

Bruel T et al.

Neutralizing Type I Interferon Autoantibodies in Japanese Patients with Severe COVID-19.

Eto S et al.

Nonessential tRNA and rRNA modifications impact the bacterial response to sub-MIC antibiotic stress.

Babosan A et al.

Novel Ehrlichia canis genogroup in dogs with canine ehrlichiosis in Cuba.

Navarrete MG et al.

Optimized Lambda Exonuclease Digestion or Purification Using Streptavidin-Coated Beads: Which One Is Best for Successful DNA Aptamer Selection?

Le Dortz LL et al.

Origins of transfer establish networks of functional dependencies for plasmid transfer by conjugation.

Ares-Arroyo M et al.

Outbreak of Imported Seventh Pandemic Vibrio cholerae O1 El Tor, Algeria, 2018.

Benamrouche N et al.

Oxidative Phosphorylation Is Required for Powering Motility and Development of the Sleeping Sickness Parasite Trypanosoma brucei in the Tsetse Fly Vector.

Dewar CE et al.

Partial human Janus kinase 1 deficiency predominantly impairs responses to interferon gamma and intracellular control of mycobacteria.

Daza-Cajigal V et al.

Phage-Plasmids Spread Antibiotic Resistance Genes through Infection and Lysogenic Conversion.

Pfeifer E et al.

Phages and their satellites encode hotspots of antiviral systems.

Rousset F et al.

Plasma antibodies from humans infected with zoonotic simian foamy virus do not inhibit cell-to-cell transmission of the virus despite binding to the surface of infected cells.

Couteaudier M et al.

Plasmodium sporozoite disintegration during skin passage limits malaria parasite transmission.

Kehrer J et al.

Potential role of vaccines in elimination of Plasmodium vivax.

White M et al.

Progress in Research on African Trypanosomes: Highlights from an Exceptional Decade.

Hutchinson S et al.

Pseudomonas aeruginosa Production of Hydrogen Cyanide Leads to Airborne Control of Staphylococcus aureus Growth in Biofilm and In Vivo Lung Environments.

Létoffé S et al.

Pulmonary Alveolar Proteinosis and Multiple Infectious Diseases in a Child with Autosomal Recessive Complete IRF8 Deficiency.

Rosain J et al.

RACK1 Associates with RNA-Binding Proteins Vigilin and SERBP1 to Facilitate Dengue Virus Replication.

Brugier A et al.

Rapid antigen testing as a reactive response to surges in nosocomial SARS-CoV-2 outbreak risk.

Smith DRM et al.

Rapid evolution of a novel protective symbiont into keystone taxon in Caenorhabditis elegans microbiota.

Wu-Chuang A et al.

Recessive inborn errors of type I IFN immunity in children with COVID-19 pneumonia.

Zhang Q et al.

Reconstructing antibody dynamics to estimate the risk of influenza virus infection.

Tsang TK et al.

Reconstructing long-term dengue virus immunity in French Polynesia.

Nemoto T et al.

Reformulating Optical Flow to Solve Image-Based Inverse Problems and Quantify Uncertainty.

Boquet-Pujadas A et al.

Reply to: The role of pets in SARS-CoV-2 transmission: an exploratory analysis.

Galmiche S et al.

Respiratory viral infections in otherwise healthy humans with inherited IRF7 deficiency.

Campbell TM et al.

Restriction of intraflagellar transport to some microtubule doublets: An opportunity for cilia diversification?

Mallet A et al.

Rickettsia helvetica infection is associated with microbiome modulation in Ixodes ricinus collected from humans in Serbia.

Maitre A et al.

RNase E and HupB dynamics foster mycobacterial cell homeostasis and fitness.

Griego A et al.

SARS-CoV-2 exposures of healthcare workers from primary care, long-term care facilities and hospitals: a nationwide matched case-control study.

Belan M et al.

SARS‐CoV‐2 Omicron emergence urges for reinforced One‐Health surveillance.

Montagutelli X et al.

Selection for nonspecific adhesion is a driver of FimH evolution increasing Escherichia coli biofilm capacity.

Yoshida M et al.

Selfish, promiscuous and sometimes useful: how mobile genetic elements drive horizontal gene transfer in microbial populations.

Haudiquet M et al.

Seroepidemiology of enterovirus A71 infection in prospective cohort studies of children in southern China, 2013-2018.

Yang J et al.

Serum neutralization of SARS-CoV-2 Omicron sublineages BA.1 and BA.2 in patients receiving monoclonal antibodies.

Bruel T et al.

sgDI-tector: defective interfering viral genome bioinformatics for detection of coronavirus subgenomic RNAs.

Gioacchino AD et al.

SHERLOCK4HAT: A CRISPR-based tool kit for diagnosis of Human African Trypanosomiasis.

Sima N et al.

Species-Specific Molecular Barriers to SARS-CoV-2 Replication in Bat Cells.

Aicher S-M et al.

Specificities and Commonalities of Carbapenemase-Producing Escherichia coli Isolated in France from 2012 to 2015

Patiño-Navarrete R. et al.

Spotlight on FtsZ-based cell division in Archaea.

Ithurbide S et al.

STING orchestrates the crosstalk between polyunsaturated fatty acid metabolism and inflammatory responses.

Vila IK et al.

Structural and Genomic Evolution of RRNPPA Systems and Their Pheromone Signaling.

Felipe-Ruiz A et al.

Structural basis of synergistic neutralization of Crimean-Congo hemorrhagic fever virus by human antibodies.

Mishra AK et al.

Structural insights of a highly potent pan-neutralizing SARS-CoV-2 human monoclonal antibody.

Torres JL et al.

Stuart: an R package for the curation of SNP genotypes from experimental crosses.

Bourdon M et al.

Tecovirimat is effective against human monkeypox virus in vitro at nanomolar concentrations.

Frenois-Veyrat G et al.

The cell biology of archaea.

Van Wolferen M et al.

The cnf1 gene is associated with an expanding Escherichia coli ST131 H 30Rx/C2 subclade and confers a competitive advantage for gut colonization.

Tsoumtsa Meda LL et al.

The evolution and role of eukaryotic-like domains in environmental intracellular bacteria: the battle with a eukaryotic cell.

Martyn JE et al.

The Fe–S proteome of Escherichia coli : prediction, function, and fate.

Lénon M et al.

The genetic and evolutionary determinants of COVID-19 susceptibility.

Kerner G et al.

The genomic landscape of contemporary western Remote Oceanians.

Arauna LR et al.

The genomic signatures of natural selection in admixed human populations.

Cuadros-Espinoza S et al.

The Impact of Cocirculating Pathogens on Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2)/Coronavirus Disease 2019 Surveillance: How Concurrent Epidemics May Introduce Bias and Decrease the Observed SARS-CoV-2 Percentage Positivity.

Kovacevic A et al.

The MtZ Strain: Molecular Characteristics and Outbreak Investigation of the Most Successful Mycobacterium tuberculosis Strain in Aragon Using Whole-Genome Sequencing.

Comín J et al.

The origin of RNA interference: Adaptive or neutral evolution?

Torri A et al.

The Pathogenesis of Giant Condyloma Acuminatum (Buschke-Lowenstein Tumor): An Overview.

Purzycka-Bohdan D et al.

The risk of COVID-19 death is much greater and age dependent with type I IFN autoantibodies.

Manry J et al.

The Spike-Stabilizing D614G Mutation Interacts with S1/S2 Cleavage Site Mutations To Promote the Infectious Potential of SARS-CoV-2 Variants.

Gellenoncourt S et al.

The Strategy of Paratransgenesis for the Control of Malaria Transmission.

Fofana A et al.

The tiger mosquito in Lebanon two decades after its introduction: A growing health concern.

Haddad N et al.

The transfer of maternal antibodies and dynamics of maternal and natural infection-induced antibodies against coxsackievirus A16 in Chinese children 0–13 years of age: a longitudinal cohort study.

Zhou J et al.

The virome of Rhipicephalus , Dermacentor and Haemaphysalis ticks from Eastern Romania includes novel viruses with potential relevance for public health.

Bratuleanu BE et al.

Tracking receptor motions at the plasma membrane reveals distinct effects of ligands on CCR5 dynamics depending on its dimerization status.

Momboisse F et al.

Transcription Dependent Loss of an Ectopically Expressed Variant Surface Glycoprotein during Antigenic Variation in Trypanosoma brucei.

McLaughlin EJ et al.

Translocated Legionella pneumophila small RNAs mimic eukaryotic microRNAs targeting the host immune response.

Sahr T et al.

Type B and type A influenza polymerases have evolved distinct binding interfaces to recruit the RNA polymerase II CTD.

Krischuns T et al.

Type I interferons and SARS-CoV-2: from cells to organisms.

Bastard P et al.

Type IX Secretion System Effectors and Virulence of the Model Flavobacterium columnare Strain MS-FC-4.

Thunes NC et al.

Unbridled Integrons: A Matter of Host Factors.

Richard E et al.

Using capillary electrophoresis to identify Anopheline species in routine sampling sites.

Chabanol E et al.

Vaccine breakthrough hypoxemic COVID-19 pneumonia in patients with auto-Abs neutralizing type I IFNs.

Bastard P et al.

Vector microbiota manipulation by host antibodies: the forgotten strategy to develop transmission-blocking vaccines.

Maitre A et al.

VEX1 Influences mVSG Expression During the Transition to Mammalian Infectivity in Trypanosoma brucei.

Tihon E et al.

When bacteria are phage playgrounds: interactions between viruses, cells, and mobile genetic elements.

Pfeifer E et al.

Zika virus infection of mature neurons from immunocompetent mice generates a disease-associated microglia and a tauopathy-like phenotype in link with a delayed interferon beta response.

Manet C et al.

Neutralizing type‐I interferon autoantibodies are associated with delayed viral clearance and intensive care unit admission in patients with COVID‐19.

Abers MS et al.

X-Linked TLR7 Deficiency Underlies Critical COVID-19 Pneumonia in a Male Patient with Ataxia-Telangiectasia.

Abolhassani H et al.

NOD1 sensing of house dust mite–derived microbiota promotes allergic experimental asthma.

Ait Yahia S et al.

Parallel in vivo experimental evolution reveals that increased stress resistance was key for the emergence of persistent tuberculosis bacilli.

Allen AC et al.

Association of moral values with vaccine hesitancy.

Amin AB et al.

Evaluating the impact of curfews and other measures on SARS-CoV-2 transmission in French Guiana.

Andronico A et al.

Evolution of ColE1-like plasmids across γ-Proteobacteria: From bacteriocin production to antimicrobial resistance.

Ares-Arroyo M et al.

Exploiting natural antiviral immunity for the control of pandemics: Lessons from Covid-19.

Aricò E et al.

Tick Importin-α Is Implicated in the Interactome and Regulome of the Cofactor Subolesin.

Artigas-Jerónimo S et al.

X-linked recessive TLR7 deficiency in ~1% of men under 60 years old with life-threatening COVID-19.

Asano T et al.

Human STAT3 variants underlie autosomal dominant hyper-IgE syndrome by negative dominance.

Asano T et al.

CEP164C regulates flagellum length in stable flagella.

Atkins M et al.

Recent African strains of Zika virus display higher transmissibility and fetal pathogenicity than Asian strains.

Aubry F et al.

Ongoing diphtheria outbreak in Yemen: a cross-sectional and genomic epidemiology study.

Badell E et al.

Atelerix algirus, the North African Hedgehog: Suitable Wild Host for Infected Ticks and Fleas and Reservoir of Vector-Borne Pathogens in Tunisia.

Balti G et al.

Shared Odds of Borrelia and Rabies Virus Exposure in Serbia.

Banović P et al.

Lifestyle-specific S-nitrosylation of protein cysteine thiols regulates Escherichia coli biofilm formation and resistance to oxidative stress.

Barraud N et al.

Drivers of ESBL-producing Escherichia coli dynamics in calf fattening farms: A modelling study.

Bastard J et al.

Autoantibodies neutralizing type I IFNs are present in ~4% of uninfected individuals over 70 years old and account for ~20% of COVID-19 deaths.

Bastard P et al.

Interferon-β Therapy in a Patient with Incontinentia Pigmenti and Autoantibodies against Type I IFNs Infected with SARS-CoV-2.

Bastard P et al.

Herpes simplex encephalitis in a patient with a distinctive form of inherited IFNAR1 deficiency.

Bastard P et al.

Auto-antibodies to type I IFNs can underlie adverse reactions to yellow fever live attenuated vaccine.

Bastard P et al.

Preexisting autoantibodies to type I IFNs underlie critical COVID-19 pneumonia in patients with APS-1.

Bastard P et al.

Gut biofilms: Bacteroides as model symbionts to study biofilm formation by intestinal anaerobes.

Béchon N et al.

Mathematical modelling of SARS-CoV-2 infection of human and animal host cells reveals differences in the infection rates and delays in viral particle production by infected cells.

Bernhauerová V et al.

Sera Neutralizing Activities Against Severe Acute Respiratory Syndrome Coronavirus 2 and Multiple Variants 6 Months After Hospitalization for Coronavirus Disease 2019.

Betton M et al.

Humans with inherited T cell CD28 deficiency are susceptible to skin papillomaviruses but are otherwise healthy.

Béziat V et al.

Detection of homozygous and hemizygous complete or partial exon deletions by whole-exome sequencing.

Bigio B et al.

Molecular omics resources should require sex annotation: a call for action.

Bond KM et al.

The Interplay Between Viruses and RNAi Pathways in Insects.

Bonning BC et al.

Quantitative characterization of extracellular vesicle uptake and content delivery within mammalian cells.

Bonsergent E et al.

Bioimage Analysis and Cell Motility.

Boquet-Pujadas A et al.

Real-time tracking of bacterial membrane vesicles reveals enhanced membrane traffic upon antibiotic exposure.

Bos J et al.

Impact of mass testing during an epidemic rebound of SARS-CoV-2: a modelling study using the example of France.

Bosetti P et al.

Controlling for human population stratification in rare variant association studies.

Bouaziz M et al.

High-Throughput Microfluidic Real-Time PCR for the Detection of Multiple Microorganisms in Ixodid Cattle Ticks in Northeast Algeria.

Boularias G et al.

The virome of Rhipicephalus , Dermacentor and Haemaphysalis ticks from Eastern Romania includes novel viruses with potential relevance for public health.

Bratuleanu BE et al.

Seventh Pandemic Vibrio cholerae O1 Sublineages, Central African Republic.

Breurec S et al.

Nutrient conditions are primary drivers of bacterial capsule maintenance in Klebsiella

Buffet A et al.

Evolution of VIM-1-Producing Klebsiella pneumoniae Isolates from a Hospital Outbreak Reveals the Genetic Bases of the Loss of the Urease-Positive Identification Character 2021

Cabanel N et al.

Tick–human interactions: from allergic klendusity to the α-Gal syndrome.

Cabezas-Cruz A et al.

Redistribution of FLAGELLAR Member 8 during the trypanosome life cycle: Consequences for cell fate prediction.

Calvo‐Álvarez E et al.

Modulation of C-to-T mutation by recombination-independent pairing of closely positioned DNA repeats.

Carlier F et al.

Mechanisms of viral inflammation and disease in humans.

Casanova J-L et al.

Unveiling Interindividual Variability of Human Fibroblast Innate Immune Response Using Robust Cell-Based Protocols.

Chansard A et al.

Intestinal immunoregulation: lessons from human mendelian diseases.

Charbit-Henrion F et al.

Impact of original, B.1.1.7, and B.1.351/P.1 SARS-CoV-2 lineages on vaccine effectiveness of two doses of COVID-19 mRNA vaccines: Results from a nationwide case-control study in France.

Charmet T et al.

Genomic insights into population history and biological adaptation in Oceania.

Choin J et al.

The histone demethylase KDM6B fine-tunes the host response to Streptococcus pneumoniae.

Connor MG et al.

Comprehensive Ecological and Geographic Characterization of Eukaryotic and Prokaryotic Microbiomes in African Anopheles.

Cuesta EB et al.

COVID-19–related anosmia is associated with viral persistence and inflammation in human olfactory epithelium and brain infection in hamsters.

De Melo GD et al.

Plasma Exchange to Rescue Patients with Autoantibodies Against Type I Interferons and Life-Threatening COVID-19 Pneumonia.

De Prost N et al.

Molecular Detection of Zoonotic and Non-Zoonotic Pathogens from Wild Boars and Their Ticks in the Corsican Wetlands.

Defaye B et al.

A novel SARS-CoV-2 related coronavirus in bats from Cambodia.

Delaune D et al.

Asymptomatic and symptomatic SARS-CoV-2 infections elicit polyfunctional antibodies.

Dufloo J et al.

Histone H3 deacetylation promotes host cell viability for efficient infection by Listeria monocytogenes.

Eldridge MJG et al.

Reverting the mode of action of the mitochondrial FOF1-ATPase by Legionella pneumophila preserves its replication niche.

Escoll P et al.

Bacterial Approaches for Assembling Iron-Sulfur Proteins.

Esquilin-Lebron K et al.

Protective neutralizing antibodies from human survivors of Crimean-Congo hemorrhagic fever.

Fels JM et al.

Structural Insights of Shigella Translocator IpaB and Its Chaperone IpgC in Solution.

Ferrari ML et al.

Human commensal gut Proteobacteria withstand type VI secretion attacks through immunity protein-independent mechanisms.

Flaugnatti N et al.

Analyzing gut microbiota composition in individual Anopheles mosquitoes after experimental treatment.

Fofana A et al.

SARS-CoV-2 infection in schools in a northern French city: a retrospective serological cohort study in an area of high transmission, France, January to April 2020.

Fontanet A et al.

The coordinated replication of Vibrio cholerae ’s two chromosomes required the acquisition of a unique domain by the RctB initiator.

Fournes F et al.

A laboratory-based study to explore the use of honey-impregnated cards to detect chikungunya virus in mosquito saliva.

Fourniol L et al.

On the strong connection between nanoscale adhesion of Yad fimbriae and macroscale attachment of Yad-decorated bacteria to glycosylated, hydrophobic and hydrophilic surfaces.

Francius G et al.

Reassessment of the risk of birth defects due to Zika virus in Guadeloupe, 2016.

Funk AL et al.

High negative predictive value of RT-PCR in patients with high likelihood of SARS-CoV-2 infection.

Galmiche S et al.

Characteristics Associated with Olfactory and Taste Disorders in COVID-19.

Galmiche S et al.

Exposures associated with SARS-CoV-2 infection in France: A nationwide online case-control study.

Galmiche S et al.

TLR3 controls constitutive IFN-β antiviral immunity in human fibroblasts and cortical neurons.

Gao D et al.

Early assessment of diffusion and possible expansion of SARS-CoV-2 Lineage 20I/501Y.V1 (B.1.1.7, variant of concern 202012/01) in France, January to March 2021.

Gaymard A et al.

α-Helices in the Type III Secretion Effectors: A Prevalent Feature with Versatile Roles.

Gazi AD et al.

Mosquito‐bacteria interactions during larval development trigger metabolic changes with carry‐over effects on adult fitness.

Giraud É et al.

Revisiting an IgG Fc Loss-of-Function Experiment: the Role of Complement in HIV Broadly Neutralizing Antibody b12 Activity.

Goldberg BS et al.

Ecological and evolutionary perspectives on tick-borne pathogen co-infections.

Gomez-Chamorro A et al.

Development of a highly specific and sensitive VHH-based sandwich immunoassay for the detection of the SARS-CoV-2 nucleoprotein.

Gransagne M et al.

In utero Zika virus exposure and neurodevelopment at 24 months in toddlers normocephalic at birth: a cohort study.

Grant R et al.

Sex Differences in the Evolution of Neutralizing Antibodies to Severe Acute Respiratory Syndrome Coronavirus 2.

Grzelak L et al.

The surface glycoproteins of hantaviruses.

Guardado-Calvo P et al.

The Viral Class II Membrane Fusion Machinery: Divergent Evolution from an Ancestral Heterodimer.

Guardado-Calvo P et al.

Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae.

Guglielmini J et al.

Listeria monocytogenes faecal carriage is common and depends on the gut microbiota.

Hafner L et al.

Interplay between the cell envelope and mobile genetic elements shapes gene flow in populations of the nosocomial pathogen Klebsiella pneumoniae.

Haudiquet M et al.

Generating functional protein variants with variational autoencoders.

Hawkins-Hooker A et al.

The Effect of Secondary Metabolites Produced by Serratia marcescens on Aedes aegypti and Its Microbiota.

Heu K et al.

The ring finger protein 213 gene (Rnf213) contributes to Rift Valley fever resistance in mice.

Houzelstein D et al.

Model-based assessment of Chikungunya and O’nyong-nyong virus circulation in Mali in a serological cross-reactivity context.

Hozé N et al.

Monitoring the proportion of the population infected by SARS-CoV-2 using age-stratified hospitalisation and serological data: a modelling study.

Hozé N et al.

The establishment of variant surface glycoprotein monoallelic expression revealed by single-cell RNA-seq of Trypanosoma brucei in the tsetse fly salivary glands.

Hutchinson S et al.

Viral evolution sustains a dengue outbreak of enhanced severity.

Inizan C et al.

Cell-Associated HIV Cross-Presentation by Plasmacytoid Dendritic Cells Is Potentiated by Noncognate CD8+ T Cell Preactivation.

Isnard S et al.

Duplication of the IL2RA locus causes excessive IL-2 signaling and may predispose to very early onset colitis.

Joosse ME et al.

Human ancient DNA analyses reveal the high burden of tuberculosis in Europeans over the last 2,000 years.

Kerner G et al.

New insights into human immunity from ancient genomics.

Kerner G et al.

Live Imaging Reveals Listeria Hijacking of E-Cadherin Recycling as It Crosses the Intestinal Barrier.

Kim M et al.

Interactions of the Insect-Specific Palm Creek Virus with Zika and Chikungunya Viruses in Aedes Mosquitoes.

Koh C et al.

New Insights into Chikungunya Virus Infection and Pathogenesis.

Kril V et al.

Internalization Assays for Listeria monocytogenes.

Kühbacher A et al.

Sporadic occurrence of recent selective sweeps from standing variation in humans as revealed by an approximate Bayesian computation approach.

Laval G et al.

Inherited deficiency of stress granule ZNFX1 in patients with monocytosis and mycobacterial disease.

Le Voyer T et al.

Genetic, Immunological, and Clinical Features of 32 Patients with Autosomal Recessive STAT1 Deficiency.

Le Voyer T et al.

Evolution of outcomes for patients hospitalised during the first 9 months of the SARS-CoV-2 pandemic in France: A retrospective national surveillance data analysis.

Lefrancq N et al.

Mode of action of lipoprotein modification enzymes—Novel antibacterial targets.

Legood S et al.

Exploration of binary protein–protein interactions between tick-borne flaviviruses and Ixodes ricinus.

Lemasson M et al.

Defective viral genomes from chikungunya virus are broad-spectrum antivirals and prevent virus dissemination in mosquitoes.

Levi LI et al.

Inherited human c-Rel deficiency disrupts myeloid and lymphoid immunity to multiple infectious agents.

Lévy R et al.

Monoclonal antibody-mediated neutralization of SARS-CoV-2 in an IRF9-deficient child.

Lévy R et al.

Biochemically deleterious human NFKB1 variants underlie an autosomal dominant form of common variable immunodeficiency.

Li J et al.

A Secreted NlpC/P60 Endopeptidase from Photobacterium damselae subsp. piscicida Cleaves the Peptidoglycan of Potentially Competing Bacteria.

Lisboa J et al.

Early nasal type I IFN immunity against SARS-CoV-2 is compromised in patients with autoantibodies against type I IFNs.

Lopez J et al.

Salmonella enters a dormant state within human epithelial cells for persistent infection.

Luk CH et al.

ESX-1-Independent Horizontal Gene Transfer by Mycobacterium tuberculosis Complex Strains.

Madacki J et al.

To give or not to give antibiotics is not the only question.

Magalhães C et al.

Influenza B Virus Infection Is Enhanced Upon Heterotypic Co-infection With Influenza A Virus.

Malausse N et al.

Epidemiology and Genetic Variability of HHV-8/KSHV among Rural Populations and Kaposi’s Sarcoma Patients in Gabon, Central Africa. Review of the Geographical Distribution of HHV-8 K1 Genotypes in Africa.

Mamimandjiami AI et al.

Single-Cell Analysis of Mycobacteria Using Microfluidics and Time-Lapse Microscopy.

Manina G et al.

Colonization of dermal arterioles by Neisseria meningitidis provides a safe haven from neutrophils.

Manriquez V et al.

Rapid decline of neutralizing antibodies against SARS-CoV-2 among infected healthcare workers.

Marot S et al.

Factors that influence bidirectional long-tract homozygosis due to double-strand break repair in Candida albicans.

Marton T et al.

Anti-Microbiota Vaccines Modulate the Tick Microbiome in a Taxon-Specific Manner.

Mateos-Hernández L et al.

The CovR regulatory network drives the evolution of Group B Streptococcus virulence.

Mazzuoli M-V et al.

Chikungunya Virus Replication Rate Determines the Capacity of Crossing Tissue Barriers in Mosquitoes.

Merwaiss F et al.

Characterising proteolysis during SARS-CoV-2 infection identifies viral cleavage sites and cellular targets with therapeutic potential.

Meyer B et al.

Viral infections in humans and mice with genetic deficiencies of the type I IFN response pathway.

Meyts I et al.

Wolf in Sheep’s Clothing: Clostridioides difficile Biofilm as a Reservoir for Recurrent Infections.

Meza-Torres J et al.

Listeriolysin S: A bacteriocin from Listeria monocytogenes that induces membrane permeabilization in a contact-dependent manner.

Meza-Torres J et al.

Structural basis of synergistic neutralization of Crimean-Congo hemorrhagic fever virus by human antibodies.

Mishra AK et al.

Release of infectious virus and cytokines in nasopharyngeal swabs from individuals infected with non-alpha or alpha SARS-CoV-2 variants: an observational retrospective study.

Monel B et al.

Causes and Consequences of Bacteriophage Diversification via Genetic Exchanges across Lifestyles and Bacterial Taxa.

Moura De Sousa JA et al.

Involvement of amyloid proteins in the formation of biofilms in the pathogenic yeast Candida albicans.

Mourer T et al.

Evaluating the Stability of Spatial Keypoints via Cluster Core Correspondence Index.

Mukherjee S et al.

First Evidence of Ehrlichia minasensis Infection in Horses from Brazil.

Muraro LS et al.

Impaired respiratory burst contributes to infections in PKCδ-deficient patients.

Neehus A-L et al.

Innovative Toolbox for the Quantification of Drosophila C Virus, Drosophila A Virus, and Nora Virus.

Nigg JC et al.

Assessing the feasibility of Nipah vaccine efficacy trials based on previous outbreaks in Bangladesh.

Nikolay B et al.

Inhibition of HECT E3 ligases as potential therapy for COVID-19.

Novelli G et al.

Potential role of vector-mediated natural selection in dengue virus genotype/lineage replacements in two epidemiologically contrasted settings.

O’Connor O et al.

Age-specific mortality and immunity patterns of SARS-CoV-2.

O’Driscoll M et al.

Single-Cell and Bulk RNA-Sequencing Reveal Differences in Monocyte Susceptibility to Influenza A Virus Infection Between Africans and Europeans.

O’Neill MB et al.

Inherited PD-1 deficiency underlies tuberculosis and autoimmunity in a child.

Ogishi M et al.

Multibatch Cytometry Data Integration for Optimal Immunophenotyping.

Ogishi M et al.

SARS-CoV-2 induces human plasmacytoid predendritic cell diversification via UNC93B and IRAK4.

Onodi F et al.

Pathogenomic analyses of Mycobacterium microti, an ESX-1-deleted member of the Mycobacterium tuberculosis complex causing disease in various hosts.

Orgeur M et al.

Effect of change in vaccine schedule on pertussis epidemiology in France: a modelling and serological study.

Paireau J et al.

PGFinder, a novel analysis pipeline for the consistent, reproducible, and high-resolution structural analysis of bacterial peptidoglycans.

Patel AV et al.

(p)ppGpp/GTP and Malonyl-CoA Modulate Staphylococcus aureus Adaptation to FASII Antibiotics and Provide a Basis for Synergistic Bi-Therapy.

Pathania A et al.